Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1404927_1406008_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1404927 - 1406008

Intron Length:

1082

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGACTG

5'SS Class:

strong_major

3'SS Sequence:

TAATTGACTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTCTTTTTAATT

Flanking Amino Acid:

CHDNFAPGEEAWKSHLMGKD

Intron Amino Acid Position:

873

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

75.5

40.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

60.2

0.23

1.2

62.2

Minor 5ss

35.6

-1.6

3.2

47.4

Minor BPS

0.96

86.64

33.8

Associated Gene:

Gene:

CEP104

Ensembl Gene ID:

ENSAPLG00000003555

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003652

1403447 - 1417594

14148