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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1407818_1407979_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1407818 - 1407979
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTTACA
Flanking Amino Acid:
ESDFQKPKDQGYPVNRSPQS
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
95.3
1.02
0.5
91.2
20.6
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
63.5
0.42
1.6
76.13
34.5

Associated Gene:

Gene:
CEP104
Ensembl Gene ID:
ENSAPLG00000003555
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003652
1403447 - 1417594
14148