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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1408017_1408408_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1408017 - 1408408
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGGTG
5'SS Class:
major
3'SS Sequence:
CTTTGTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
CTTTGTTCAATA
Flanking Amino Acid:
EIQAEVQAGKEMESDFQKPK
Intron Amino Acid Position:
728

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
67.8
43.5
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
73.5
0.53
0.9
70
35.3
Minor 5ss
28.2
-2.5
3.5
37.8
47.1
Minor BPS
51.8
0.05
2
66.76
40.7

Associated Gene:

Gene:
CEP104
Ensembl Gene ID:
ENSAPLG00000003555
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003652
1403447 - 1417594
14148