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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1412216_1413040_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1412216 - 1413040
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTGTCTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCTAGAATA
Flanking Amino Acid:
TSREAFHKENVEFLPYDERP
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.5
32.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.2
0.52
1
73.5
37.1
Minor 5ss
32
-2.1
2.7
35.9
33.5
Minor BPS
57
0.22
1.7
71.7
34

Associated Gene:

Gene:
CEP104
Ensembl Gene ID:
ENSAPLG00000003555
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003652
1403447 - 1417594
14148