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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1414471_1414623_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1414471 - 1414623
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAGATA
5'SS Class:
major
3'SS Sequence:
TTTATATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTTCATT
Flanking Amino Acid:
DDPALDGTYLGKSDFISPLD
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
72
39.3
Major BPS
100
1.24
0.5
100
0
Major PPT
84.9
0.78
0.8
82.3
34.3
Minor 5ss
34.8
-1.7
3.3
39.7
46.1
Minor BPS
62.8
0.48
1.7
81.14
35.2

Associated Gene:

Gene:
CEP104
Ensembl Gene ID:
ENSAPLG00000003555
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003652
1403447 - 1417594
14148