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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1416461_1416776_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1416461 - 1416776
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
CTTTGCTTACTT
Flanking Amino Acid:
PYQSERFHRLGYVPLSDNEK
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
74.1
38.3
Major BPS
67.6
0.44
1.2
75
40
Major PPT
89.5
0.89
0.6
88.5
20.9
Minor 5ss
33.1
-1.9
2.8
32.9
41.9
Minor BPS
58.4
0.34
2.1
79.08
43.9

Associated Gene:

Gene:
CEP104
Ensembl Gene ID:
ENSAPLG00000003555
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003652
1403447 - 1417594
14148