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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1420171_1420328_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1420171 - 1420328
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
ESRIRSYMKEVNNFISNVHP
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.4
0.89
0.7
89.2
27.3
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
DFFB
Ensembl Gene ID:
ENSAPLG00000003431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003508
1415988 - 1421291
5304