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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1420500_1420746_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1420500 - 1420746
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCATTGTAACT
Flanking Amino Acid:
CTTEGWFSCQGPFDRDDCPC
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.9
33
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
88.8
0.87
0.7
83.2
31.9
Minor 5ss
39.4
-1.2
2.9
50.7
45.6
Minor BPS
53.5
0.19
2
75.45
41.9

Associated Gene:

Gene:
DFFB
Ensembl Gene ID:
ENSAPLG00000003431
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003508
1415988 - 1421291
5304