About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1424161_1424962_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1424161 - 1424962
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTTAAAG
Flanking Amino Acid:
RFFGNIDFIQDQPAVALPST
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.2
0.63
1
78.7
27.5
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
83.7
0.92
1.3
85.06
33.6

Associated Gene:

Gene:
C1orf174
Ensembl Gene ID:
ENSAPLG00000003376
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003437
1424053 - 1429255
5203
ENSAPLT00000041129
1424008 - 1426537
2530
ENSAPLT00000035059
1424053 - 1430373
6321
ENSAPLT00000021076
1424053 - 1426125
2073