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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1425190_1425240_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1425190 - 1425240
Intron Length:
51

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAAGAGA
5'SS Class:
major
3'SS Sequence:
AAGCCATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ATTCTTTGAAGC
Flanking Amino Acid:
QKKDESIPETEKSSSGCETV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1
60.8
39.4
Major BPS
74.8
0.62
1
67
39.8
Major PPT
67.2
0.39
1
58.9
41.1
Minor 5ss
25.7
-2.8
3
27.6
38.5
Minor BPS
49.4
-0
1.7
62.5
36.8

Associated Gene:

Gene:
C1orf174
Ensembl Gene ID:
ENSAPLG00000003376
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003437
1424053 - 1429255
5203