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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1425461_1425954_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1425461 - 1425954
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGTGCAAA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTCTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTCTAACA
Flanking Amino Acid:
APPFPPFIKRSSSRKAADRQ
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.1
55.8
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.5
0.78
0.8
81.3
29.2
Minor 5ss
41.3
-1
2.8
48.4
47.6
Minor BPS
63.1
0.41
1.6
77.1
33.3

Associated Gene:

Gene:
C1orf174
Ensembl Gene ID:
ENSAPLG00000003376
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021076
1424053 - 1426125
2073