About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_14381_15058_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14381 - 15058
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTCTTATGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATGA
Flanking Amino Acid:
QKIIHKKGKVYWYKDKELLE
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.3
34.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.8
0.67
1
77
36
Minor 5ss
37.2
-1.4
3.3
52.3
39.5
Minor BPS
63.9
0.43
1.9
78.51
38.5

Associated Gene:

Gene:
MMP23B
Ensembl Gene ID:
ENSAPLG00000012333
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012849
7952 - 15233
7282