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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1500582_1507383_F

Intron Information:

Intron Rank:
133939
Intron Class:
major
Intron Phase:
Intron Coordinates:
1500582 - 1507383
Intron Length:
6802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATACAT
U12 Branch Point Sequence:
CTCTCTAGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
57.2
0.18
1.2
67
39.8
Major PPT
84.3
0.77
0.7
76
32.5
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
46.2
-0.2
2
65.09
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022018
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024057
1500379 - 1508342
7964