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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1516353_1516441_F

Intron Information:

Intron Rank:
140607
Intron Class:
major
Intron Phase:
Intron Coordinates:
1516353 - 1516441
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
AGCCTTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TAAAGAATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
76.1
0.59
0.9
69.3
36.3
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
43.3
-0.5
2.2
57.05
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025706
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026384
1515652 - 1517034
1383