Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1517137_1542215_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1517137 - 1542215

Intron Length:

25079

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGGAGG

5'SS Class:

major

3'SS Sequence:

TGTCTGTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAC

U12 Branch Point Sequence:

CTCTCTCTAACA

Flanking Amino Acid:

EKRGGGAAMCMSGCPLGSHA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

62.4

43.5

Major BPS

72.3

0.55

73.3

28.9

Major PPT

0.56

0.9

69.1

36.9

Minor 5ss

28.6

-2.4

3.1

35.2

41.4

Minor BPS

62.6

0.39

1.7

71.45

41.1

Associated Gene:

Gene:

AJAP1

Ensembl Gene ID:

ENSAPLG00000003166

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003204

1517102 - 1559036

41935