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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1557738_1558963_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1557738 - 1558963
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGCAC
U12 Branch Point Sequence:
TGCACCGGCACG
Flanking Amino Acid:
GDYKATYNGNRPSSSDRHLI
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
57.3
0.18
1.4
69.3
37.7
Major PPT
72.1
0.5
0.9
65.4
36.1
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
38.9
-1
2.4
45.55
46.4

Associated Gene:

Gene:
AJAP1
Ensembl Gene ID:
ENSAPLG00000003166
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003204
1517102 - 1559036
41935