Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1575920_1580281_F

Intron Information:

Intron Rank:

124726

Intron Class:

major

Intron Phase:

Intron Coordinates:

1575920 - 1580281

Intron Length:

4362

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TACCTCCCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAGCAT

U12 Branch Point Sequence:

TTAGCATAAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

33.4

Major BPS

63.3

0.33

1.5

41.2

Major PPT

77.5

0.62

0.8

73.9

30.8

Minor 5ss

-1.1

53.2

44.1

Minor BPS

46.5

-0.1

2.2

69.67

46.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017240

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037114

1575862 - 1580687

4826