About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1580450_1580549_F

Intron Information:

Intron Rank:
124727
Intron Class:
major
Intron Phase:
Intron Coordinates:
1580450 - 1580549
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGAAGA
5'SS Class:
major
3'SS Sequence:
GTTCACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCATGTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.2
65.5
40
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
81
0.7
0.9
77.2
36.7
Minor 5ss
35.3
-1.7
2.7
41.4
44.6
Minor BPS
46.9
-0.1
2.4
71.55
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017240
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037114
1575862 - 1580687
4826