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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1651810_1679343_F

Intron Information:

Intron Rank:
132284
Intron Class:
major
Intron Phase:
Intron Coordinates:
1651810 - 1679343
Intron Length:
27534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTCTTCTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.6
0.87
0.6
83.7
24.6
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
56.6
0.2
1.9
71.34
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021069
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046502
1651638 - 1680423
28786