About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_167953_169444_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
167953 - 169444
Intron Length:
1492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCGA
5'SS Class:
strong_major
3'SS Sequence:
ATCCGCTTCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
TTGTTCTCCATC
Flanking Amino Acid:
MSNWTSLWYVWLILLTMFML
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
70.7
41.3
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
59.4
0.21
1.1
56
38.6
Minor 5ss
33.7
-1.9
2.9
38.4
41.6
Minor BPS
49.6
-0
2
65.63
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011032
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011476
166797 - 170721
3925