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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_169490_170284_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
169490 - 170284
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
CCTTCCTTCACA
Flanking Amino Acid:
APARGWRRSDRCPQNMSNWT
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.3
34.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
80.9
0.7
0.7
75.2
26.9
Minor 5ss
32
-2.1
2.6
39.1
38.9
Minor BPS
68.8
0.59
1.8
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011032
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011476
166797 - 170721
3925