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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1699282_1699705_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1699282 - 1699705

Intron Length:

424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

GTTGCCGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAT

U12 Branch Point Sequence:

CACCTCTGAGCC

Flanking Amino Acid:

QIKKFFVAIYTDAWLAAPLR

Intron Amino Acid Position:

1214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

1.2

87.1

Major BPS

73.6

0.59

1.2

65.3

43.7

Major PPT

70.2

0.45

62.3

39.8

Minor 5ss

40.7

-1

2.8

50.6

39.2

Minor BPS

45.4

-0.3

1.7

49.46

40.6

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046984

1698774 - 1725422

26649

ENSAPLT00000042045

1698774 - 1853266

154493

ENSAPLT00000002520

1698774 - 1725422

26649