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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1699792_1700745_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1699792 - 1700745
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGAGTT
5'SS Class:
major
3'SS Sequence:
TTTCTGCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTATTCTAACG
Flanking Amino Acid:
PNIICETKNMGPGEPQDVFL
Intron Amino Acid Position:
1186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
71.8
38.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.2
0.66
0.9
74
35.7
Minor 5ss
35.4
-1.7
3.8
52.6
46.5
Minor BPS
48.7
-0.2
1.7
54.47
40.9

Associated Gene:

Gene:
NPHP4
Ensembl Gene ID:
ENSAPLG00000002485
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042045
1698774 - 1853266
154493
ENSAPLT00000002520
1698774 - 1725422
26649
ENSAPLT00000046984
1698774 - 1725422
26649