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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1700832_1701232_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1700832 - 1701232
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCCT
5'SS Class:
major
3'SS Sequence:
TTCTCCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TATTGTTTCATC
Flanking Amino Acid:
IRLPPWHTLPGAPAGMPGGE
Intron Amino Acid Position:
1157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
65
40.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.5
0.78
0.7
80.2
25.1
Minor 5ss
28
-2.5
3.2
39.9
45.7
Minor BPS
49.6
-0
2.1
66.7
39.8

Associated Gene:

Gene:
NPHP4
Ensembl Gene ID:
ENSAPLG00000002485
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046984
1698774 - 1725422
26649
ENSAPLT00000042045
1698774 - 1853266
154493
ENSAPLT00000002520
1698774 - 1725422
26649