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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1701390_1701493_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1701390 - 1701493

Intron Length:

104

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGAAGC

5'SS Class:

major

3'SS Sequence:

TCTCTCTCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

TGCTGCTGAGCT

Flanking Amino Acid:

PGALQTKHIQVAFRVSGGKP

Intron Amino Acid Position:

1105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

65.9

40.1

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

0.59

0.9

73.1

31.8

Minor 5ss

-2.6

34.1

41.6

Minor BPS

48.2

-0

2.1

69.66

46.7

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046984

1698774 - 1725422

26649

ENSAPLT00000042045

1698774 - 1853266

154493

ENSAPLT00000002520

1698774 - 1725422

26649