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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1701575_1701730_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1701575 - 1701730

Intron Length:

156

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTATGCTGG

5'SS Class:

major

3'SS Sequence:

CTGTGTCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCAAAC

U12 Branch Point Sequence:

GCTGTGCAAACT

Flanking Amino Acid:

SAEPAVAAVPGPAGLSAGDD

Intron Amino Acid Position:

1078

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

53.6

45.9

Major BPS

52.2

0.06

1.1

Major PPT

76.3

0.59

0.9

69.7

36.7

Minor 5ss

49.8

-0

2.5

64.4

Minor BPS

38.1

-0.8

2.4

56.08

46.3

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042045

1698774 - 1853266

154493

ENSAPLT00000002520

1698774 - 1725422

26649

ENSAPLT00000046984

1698774 - 1725422

26649