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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1701921_1702128_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1701921 - 1702128
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAC
5'SS Class:
major
3'SS Sequence:
CTCGCTCCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCACCCACAGCT
Flanking Amino Acid:
VTIEVDHPELSVILDPREWR
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.4
38.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
75
0.56
0.8
65.4
36.2
Minor 5ss
28.1
-2.5
3.7
39.6
46.7
Minor BPS
45.1
-0.2
2
64.19
45.3

Associated Gene:

Gene:
NPHP4
Ensembl Gene ID:
ENSAPLG00000002485
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042045
1698774 - 1853266
154493
ENSAPLT00000002520
1698774 - 1725422
26649
ENSAPLT00000046984
1698774 - 1725422
26649