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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1702596_1849580_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1702596 - 1849580
Intron Length:
146985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CAGGCTGGCCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGTCCAA
U12 Branch Point Sequence:
GTCTCGGGCACG
Flanking Amino Acid:
NLQESGLLCEVDGELAATLC
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
44.1
-0.3
1.4
50.2
45.2
Major PPT
42.1
-0.4
1.7
34.2
40.6
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
34.6
-1.3
2.8
44.32
47.3

Associated Gene:

Gene:
NPHP4
Ensembl Gene ID:
ENSAPLG00000002485
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042045
1698774 - 1853266
154493