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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1702631_1702735_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1702631 - 1702735

Intron Length:

105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

GCTCTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACCCAA

U12 Branch Point Sequence:

AGTGCCACACCG

Flanking Amino Acid:

GSLLSLHTRSGPRVSRARRL

Intron Amino Acid Position:

872

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

71.8

39.7

Major BPS

45.1

-0.3

1.3

50.4

36.7

Major PPT

76.7

0.6

0.8

69.7

31.1

Minor 5ss

31.9

-2.1

2.9

43.6

43.3

Minor BPS

41.4

-0.7

2.1

47.92

44.9

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002520

1698774 - 1725422

26649

ENSAPLT00000046984

1698774 - 1725422

26649