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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1702865_1704712_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1702865 - 1704712

Intron Length:

1848

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

AGGGGCTCACCC

Flanking Amino Acid:

GHLHLCLANVGHPCEETPRI

Intron Amino Acid Position:

829

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

68.7

36.4

Major BPS

52.1

0.05

1.3

41.8

Major PPT

68.4

0.42

1.1

64.8

41.3

Minor 5ss

30.3

-2.3

3.2

31.5

42.2

Minor BPS

39.7

-0.8

2.1

45.3

43.2

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002520

1698774 - 1725422

26649

ENSAPLT00000046984

1698774 - 1725422

26649