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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1704894_1705505_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1704894 - 1705505

Intron Length:

612

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTCCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTTTTCTTCCCC

Flanking Amino Acid:

LVGSAAVKLKPLLRQGRPAV

Intron Amino Acid Position:

769

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

69.5

41.1

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

87.5

0.84

0.7

81.1

30.9

Minor 5ss

38.7

-1.3

3.1

51.6

45.2

Minor BPS

46.3

-0.3

3.6

77.35

39.1

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046984

1698774 - 1725422

26649

ENSAPLT00000002520

1698774 - 1725422

26649