Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1707016_1707654_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1707016 - 1707654

Intron Length:

639

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGACGC

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTGCTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACCAAA

U12 Branch Point Sequence:

CCAACCAAACCC

Flanking Amino Acid:

EIILQFLAFSRAPQDGVEGT

Intron Amino Acid Position:

652

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

69.9

41.1

Major BPS

48.4

-0.1

1.1

54.7

28.7

Major PPT

69.4

0.44

1.1

67.5

38.2

Minor 5ss

32.3

-2

3.1

42.6

44.3

Minor BPS

39.3

-0.8

44.36

43.4

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002520

1698774 - 1725422

26649

ENSAPLT00000046984

1698774 - 1725422

26649