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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1708255_1709300_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1708255 - 1709300

Intron Length:

1046

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TTCACAGTATCC

Flanking Amino Acid:

RPATSPRGPGLSLSELSASP

Intron Amino Acid Position:

499

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.87

0.9

77.9

38.6

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

92.2

0.95

0.6

84.9

29.9

Minor 5ss

34.6

-1.7

2.7

34.2

41.4

Minor BPS

43.3

-0.5

2.4

60.07

44.8

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002520

1698774 - 1725422

26649

ENSAPLT00000046984

1698774 - 1725422

26649