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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1712381_1713242_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1712381 - 1713242

Intron Length:

862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGGAT

5'SS Class:

strong_major

3'SS Sequence:

TTCAAATTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAA

U12 Branch Point Sequence:

AAGTATTTAACT

Flanking Amino Acid:

APADSESSEEVKQVASGTVQ

Intron Amino Acid Position:

440

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.1

Major BPS

79.5

0.73

0.9

36.9

Major PPT

77.7

0.62

0.9

73.7

40.4

Minor 5ss

30.9

-2.2

3.6

45.9

49.3

Minor BPS

66.5

0.6

1.5

76.64

39.6

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046984

1698774 - 1725422

26649

ENSAPLT00000002520

1698774 - 1725422

26649