About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1716999_1717082_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1716999 - 1717082
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
TCTTTTTCCACA
Flanking Amino Acid:
ARGRPDGPTASATGQALLLR
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
82
31
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
87.6
0.84
0.6
83.5
24.8
Minor 5ss
29.7
-2.3
3.7
45.9
49.3
Minor BPS
49.6
-0
1.9
66.33
40.9

Associated Gene:

Gene:
NPHP4
Ensembl Gene ID:
ENSAPLG00000002485
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046984
1698774 - 1725422
26649
ENSAPLT00000002520
1698774 - 1725422
26649