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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1717241_1717862_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1717241 - 1717862

Intron Length:

622

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTGCCA

5'SS Class:

major

3'SS Sequence:

CCTGGTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

TGTCCCTCACCC

Flanking Amino Acid:

ELLNSDRLLKVSTRPASSTL

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.9

0.42

1.1

42.8

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

68.7

0.42

40.2

Minor 5ss

29.7

-2.3

3.4

39.7

45.8

Minor BPS

55.2

0.14

1.9

69.34

41.6

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046984

1698774 - 1725422

26649

ENSAPLT00000002520

1698774 - 1725422

26649