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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1718000_1719732_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1718000 - 1719732

Intron Length:

1733

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGGGCC

5'SS Class:

major

3'SS Sequence:

TCTTGTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACCCAC

U12 Branch Point Sequence:

GCAGCGTTACCC

Flanking Amino Acid:

PGLLPAHGDTSDCFLKPRLM

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

71.8

33.5

Major BPS

54.6

0.11

1.2

64.4

33.8

Major PPT

86.2

0.81

0.8

80.6

31.4

Minor 5ss

32.2

-2

3.6

42.5

38.7

Minor BPS

43.5

-0.5

2.3

51.27

45.6

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046984

1698774 - 1725422

26649

ENSAPLT00000002520

1698774 - 1725422

26649