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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1719889_1721224_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1719889 - 1721224

Intron Length:

1336

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCAGC

5'SS Class:

major

3'SS Sequence:

TTCTCCTATTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

CATTTCATAATG

Flanking Amino Acid:

LHPLFQDPVEKNKYMTIMEN

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

69.9

41.1

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

78.6

0.64

0.8

77.9

29.7

Minor 5ss

41.4

-1

2.9

52.4

38.7

Minor BPS

56.5

0.06

1.7

60.87

41.4

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046984

1698774 - 1725422

26649

ENSAPLT00000002520

1698774 - 1725422

26649