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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1721290_1721582_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1721290 - 1721582

Intron Length:

293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTAGGTACT

5'SS Class:

major

3'SS Sequence:

TCTTTGGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

GTTTGGTTCACG

Flanking Amino Acid:

DPTDLAAKDRVLKLYHGTPR

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.5

0.39

1.2

68.3

42.6

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

82.9

0.74

0.9

80.2

37.3

Minor 5ss

-1.2

3.1

52.7

Minor BPS

44.1

-0.6

2.7

59.57

47.9

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002520

1698774 - 1725422

26649