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Intron Name: Anas_platyrhynchos_platyrhynchos_22_1721756_1723502_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1721756 - 1723502

Intron Length:

1747

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGGGC

5'SS Class:

major

3'SS Sequence:

GTCTCTCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGAGAT

U12 Branch Point Sequence:

GATGCCTTCTCT

Flanking Amino Acid:

QQRPRVVFNEAVYFHTSLNH

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

67.5

37.8

Major BPS

51.7

0.04

1.3

50.1

44.2

Major PPT

78.8

0.65

0.8

69.7

36.7

Minor 5ss

28.2

-2.5

3.7

40.6

Minor BPS

41.2

-0.5

3.6

69.76

46.7

Associated Gene:

Gene:

NPHP4

Ensembl Gene ID:

ENSAPLG00000002485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002520

1698774 - 1725422

26649