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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1748792_1748949_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1748792 - 1748949
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAGCAC
U12 Branch Point Sequence:
TCCCCCCCAAGC
Flanking Amino Acid:
VTFGGQITDEMAEQLMTLAY
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
43.4
-0.4
1.3
47.1
36.1
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
43.2
-0.5
2.1
52.85
44.5

Associated Gene:

Gene:
KCNAB2
Ensembl Gene ID:
ENSAPLG00000000898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011576
1737823 - 1755120
17298
ENSAPLT00000000975
1737823 - 1755151
17329
ENSAPLT00000019949
1737823 - 1755120
17298