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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1749030_1750665_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1749030 - 1750665
Intron Length:
1636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTAAA
U12 Branch Point Sequence:
GCCTAAAGAGCT
Flanking Amino Acid:
FDTAEVYAAGKAEVVLGNII
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
55
0.12
1.2
57.8
37.4
Major PPT
80.4
0.68
0.7
76.5
25.6
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
35.6
-1
2
49.18
43.1

Associated Gene:

Gene:
KCNAB2
Ensembl Gene ID:
ENSAPLG00000000898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019949
1737823 - 1755120
17298
ENSAPLT00000011576
1737823 - 1755120
17298
ENSAPLT00000000975
1737823 - 1755151
17329