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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1750711_1750893_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1750711 - 1750893
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTACG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAG
U12 Branch Point Sequence:
TTTGCAGGCACA
Flanking Amino Acid:
LGNIIKKKGWRRSSLVITTK
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
51.1
0.03
1.8
71.4
45.1
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
34.7
-1.7
2.9
42.7
44.3
Minor BPS
39.4
-0.8
2.6
61.11
44.8

Associated Gene:

Gene:
KCNAB2
Ensembl Gene ID:
ENSAPLG00000000898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019949
1737823 - 1755120
17298
ENSAPLT00000011576
1737823 - 1755120
17298
ENSAPLT00000000975
1737823 - 1755151
17329