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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1753877_1753990_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1753877 - 1753990
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
CCGGGCTTGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TGGTTTGCACCC
Flanking Amino Acid:
TSRWSSMEIMEAYSVARQFN
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
57
47.3
Major BPS
71.2
0.53
1
61
37.5
Major PPT
59
0.2
1.1
53
41.5
Minor 5ss
33.1
-1.9
3.6
43.3
45.3
Minor BPS
39.7
-0.8
2.2
50.02
41.2

Associated Gene:

Gene:
KCNAB2
Ensembl Gene ID:
ENSAPLG00000000898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019949
1737823 - 1755120
17298
ENSAPLT00000011576
1737823 - 1755120
17298
ENSAPLT00000000975
1737823 - 1755151
17329