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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1754112_1754205_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1754112 - 1754205
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
CTCTGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
GCCAGCTCAGCC
Flanking Amino Acid:
VQLPELFHKIGVGAMTWSPL
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
73.8
0.54
0.8
65
36.4
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
40
-0.7
2
43.91
43.6

Associated Gene:

Gene:
KCNAB2
Ensembl Gene ID:
ENSAPLG00000000898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019949
1737823 - 1755120
17298
ENSAPLT00000011576
1737823 - 1755120
17298
ENSAPLT00000000975
1737823 - 1755151
17329