About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1754301_1754557_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1754301 - 1754557
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TGCTGCTGACCC
Flanking Amino Acid:
IPPYSRASLKGYQWLKDKIL
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
67.9
0.4
0.8
58.2
32
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
46.5
-0.2
2.1
59.68
45.2

Associated Gene:

Gene:
KCNAB2
Ensembl Gene ID:
ENSAPLG00000000898
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019949
1737823 - 1755120
17298
ENSAPLT00000011576
1737823 - 1755120
17298
ENSAPLT00000000975
1737823 - 1755151
17329