Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1758596_1758711_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1758596 - 1758711

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAGGTTGG

5'SS Class:

major

3'SS Sequence:

CTCTTACCAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAC

U12 Branch Point Sequence:

TCTCTCTTACCA

Flanking Amino Acid:

SQMPLGPYVTDI*

Intron Amino Acid Position:

1888

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.1

46.2

Major BPS

69.2

0.48

37.1

Major PPT

67.5

0.39

0.9

63.2

31.9

Minor 5ss

38.7

-1.3

3.1

49.1

47.1

Minor BPS

0.4

1.6

72.02

40.3

Associated Gene:

Gene:

CHD5

Ensembl Gene ID:

ENSAPLG00000015475

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020685

1758545 - 1791883

33339

ENSAPLT00000016223

1758545 - 1791883

33339