Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1758827_1759026_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1758827 - 1759026

Intron Length:

200

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGGG

5'SS Class:

major

3'SS Sequence:

TTTATTTCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

CCTTGTTTATTT

Flanking Amino Acid:

TRGGEPPVQQGSFGSSQIYN

Intron Amino Acid Position:

1850

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.3

67.1

44.6

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

0.81

0.7

29.6

Minor 5ss

27.5

-2.6

2.9

32.4

42.2

Minor BPS

48.8

-0

66.47

45.5

Associated Gene:

Gene:

CHD5

Ensembl Gene ID:

ENSAPLG00000015475

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016223

1758545 - 1791883

33339

ENSAPLT00000020685

1758545 - 1791883

33339