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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1770888_1770977_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1770888 - 1770977
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAG
U12 Branch Point Sequence:
GTTGCTTTCACA
Flanking Amino Acid:
LLNFLTPERFNNLEGFLEEF
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
52.3
0.06
1.6
51.4
46
Major PPT
78.2
0.63
0.9
72
38
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
59.1
0.28
1.9
71.5
41.1

Associated Gene:

Gene:
CHD5
Ensembl Gene ID:
ENSAPLG00000015475
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016223
1758545 - 1791883
33339
ENSAPLT00000020685
1758545 - 1791883
33339