Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_1772704_1773081_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1772704 - 1773081

Intron Length:

378

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TGCCTTTGTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

GAATTGATGACT

Flanking Amino Acid:

EKPPETPLVDPTVKFDKQPW

Intron Amino Acid Position:

615

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

34.8

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

77.6

0.62

0.9

76.1

37.8

Minor 5ss

37.5

-1.4

2.8

41.7

Minor BPS

44.3

-0.3

2.2

62.12

41.5

Associated Gene:

Gene:

CHD5

Ensembl Gene ID:

ENSAPLG00000015475

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020685

1758545 - 1791883

33339

ENSAPLT00000016223

1758545 - 1791883

33339